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mechanistic-statistical environement

Nextflow pipeline creating a Neo4j Ortho_KB database.

Hosts the different implementation of EDA model

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence

Pipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.

Epidemics at the interface between domestic and wild swines in Corse (ContActs Pigs CorsE). https://umr-astre.pages.mia.inra.fr/capiche/

L'application rflomics est un package R couplé à une interface shiny permettant la gestion, l'analyse et l'intégration statistique de plusieurs jeux et types de données -omics: RNAseq, proteomics et metabolomics (pour le moment).

Lien vers l'application : https://rflomics.sk8.inrae.fr

Hardware description and pieces of software for DIY MiniRead 96-well plate optical reader, designed to monitor growth kinetics of yeast (or bacterial) cells.

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

C++ implementation of SpecOMS and new developments

Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/

GenoFig is a tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It was designed to be as easy to use as possible for biologists.

Project used to manage security for In-Sylva Information System