- Add CI/CD - Add direct download of Singularity containers - Add deduplication of reads - Add filtering of contigs - Add functional annotation of genes + associated Singularity container - Add quantification of reads by functional annotation - Add first strategy of binning (adapted from nf-core/mag v1.0.0) - Add first strategy of taxonomic affiliation of bins (from nf-core/mag v1.0.0) - Add summary tables for taxonomic affiliation of contigs - Add modularity of the pipeline: --step parameter - Add documentation - Improvement of MultiQC report: add modules into MultiQC and use of them into metagWGS - Improve README - Setting up configuration files - First optimization of memory and CPU for test data