- Multiple refactoring actions on metagwgs main script - Rename some output files and reorganize output directories: i.e: assembly step - Add mosdepth for contigs depth count + add mosdepth singularity image recipe - Add taxonomy_dir parameter to use already downloaded taxonomy database - Add functional tests script to test the pipeline output on reviewed results after functional modifications + add README - Update documentation for metagwgs - Change config for test_genotoul_workq parameters - Change metaspades and megahit to unique assembly process