added missing calculations and added data formating

integration_tests/data_test.py

+from utils.files import output
+
+def check_discrete_data(expected_file, actual_file, ndigits=7,eps=0.00001) :
+    output_file = "check_discrete_data_full.txt"
+    minimal_output_file = "check_discrete_data_minimal.txt"
+    minimal_output_data = ""
+    output_data = ""
+    expected = []
+    with open(expected_file, "r") as f:
+        expected = f.readlines()[1:]
+    expected = [line.replace(',','.').split('\t') for line in expected]
+    expected = [[float(x) for x in line] for line in expected]
+    actual = []
+    with open(actual_file, "r") as f:
+        actual = f.readlines()[1:]
+    actual = [line.split('\t') for line in actual]
+    actual = [[float(x) for x in line if x != '\n'] for line in actual]
+    for i in range(min(len(expected), len(actual))):
+        x_diff = round(abs(expected[i][0] - actual[i][0]),ndigits)
+        y_diff = round(abs(expected[i][1] - actual[i][1]),ndigits)
+        z_diff = round(abs(expected[i][2] - actual[i][2]),ndigits)
+        r_diff = round(abs(expected[i][3] - actual[i][3]),ndigits)
+        std_diff = round(abs(expected[i][4] - actual[i][4]),ndigits)
+        line = f"{str(i).rjust(4)}:\t X: {str(x_diff).rjust(8)}\t Y: {str(y_diff).rjust(8)}\t Z: {str(z_diff).rjust(8)}\t R: {str(r_diff).rjust(8)}\t STD: {str(std_diff).rjust(8)}"
+        output_data += line + "\n"
+        if x_diff > eps or y_diff > eps or z_diff > eps or r_diff > eps or std_diff > eps:
+            minimal_output_data += line + "\n"
+    output.save_output_file(output_file, output_data)
+    output.save_output_file(minimal_output_file, minimal_output_data)
+
+def check_raw_data(expected_file, actual_file, ndigits=7,eps=0.00001) :
+    output_file = "check_raw_data_full.txt"
+    minimal_output_file = "check_raw_data_minimal.txt"
+    minimal_output_data = ""
+    output_data = ""
+    expected = []
+    with open(expected_file, "r") as f:
+        expected = f.readlines()[1:]
+    expected = [line.replace(',','.').split('\t') for line in expected]
+    expected = [[float(x) for x in line] for line in expected]
+    actual = []
+    with open(actual_file, "r") as f:
+        actual = f.readlines()[1:]
+    actual = [line.split('\t') for line in actual]
+    actual = [[float(x) for x in line if x != '\n'] for line in actual]
+    for i in range(min(len(expected), len(actual))):
+        x_diff = round(abs(expected[i][0] - actual[i][0]),ndigits)
+        y_diff = round(abs(expected[i][1] - actual[i][1]),ndigits)
+        z_diff = round(abs(expected[i][2] - actual[i][2]),ndigits)
+        t_diff = round(abs(expected[i][3] - actual[i][3]),ndigits)
+        r_diff = round(abs(expected[i][4] - actual[i][4]),ndigits)
+        xmoy_diff = round(abs(expected[i][5] - actual[i][5]),ndigits)
+        ymoy_diff = round(abs(expected[i][6] - actual[i][6]),ndigits)
+        line = f"{str(i).rjust(4)}:\t X: {str(x_diff).rjust(8)}\t Y: {str(y_diff).rjust(8)}\t Z: {str(z_diff).rjust(8)}\t T: {str(t_diff).rjust(8)}\t R: {str(r_diff).rjust(8)}\t Xmoy: {str(xmoy_diff).rjust(8)}\t Ymoy: {str(ymoy_diff).rjust(8)}"
+        output_data += line + "\n"
+        if x_diff > eps:
+            minimal_output_data += f"{i} : {x_diff}\n"
+        if y_diff > eps:
+            minimal_output_data += f"{i} : {y_diff}\n"
+        if z_diff > eps:
+            minimal_output_data += f"{i} : {z_diff}\n"
+        if t_diff > eps:
+            minimal_output_data += f"{i} : {t_diff}\n"
+        if r_diff > eps:
+            minimal_output_data += f"{i} : {r_diff}\n"
+        if xmoy_diff > eps:
+            minimal_output_data += f"{i} : {xmoy_diff}\n"
+        if ymoy_diff > eps:
+            minimal_output_data += f"{i} : {ymoy_diff}\n"
+    output.save_output_file(output_file, output_data)
+    output.save_output_file(minimal_output_file, minimal_output_data)

main.py

 from utils.math import utils
-from utils.files import file_data
 from utils.files import output
 from utils.files import parsers
+from integration_tests import data_test
+
+def get_raw_data(obj, ndigits):
+    colones = ["X (en mm)", "Y (en mm)", "Z (en mm)", "teta (en rad)", "rayon (en mm)","Xi-Xmoy","Yi-Ymoy"]
+    data = {}
+    for colone in colones:
+        data[colone] = []
+    for discrete_values in obj.get_discrete_vertices(1):
+        mean_x ,mean_y, mean_z = utils.get_x_y_z_mean(discrete_values)
+        for x,y,z in discrete_values:
+            data["X (en mm)"].append(round(x, ndigits))
+            data["Y (en mm)"].append(round(y, ndigits))
+            data["Z (en mm)"].append(round(z, ndigits))
+            data["teta (en rad)"].append(round(utils.get_teta_from_x_y(x,y,mean_x,mean_y), ndigits))
+            data["rayon (en mm)"].append(round(utils.get_radius_from_x_y(x,y,mean_x,mean_y), ndigits))
+            data["Xi-Xmoy"].append(round(x-mean_x, ndigits))
+            data["Yi-Ymoy"].append(round(y-mean_y, ndigits))
+    return data
+
+def get_discrete_data(obj, ndigits):
+    colones = ["X moy (en mm)", "Y moy (en mm)", "Z moy (en mm)","Rayon moyen (en mm)","Rayon ecart type (en mm)"]
+    data = {}
+    for colone in colones:
+        data[colone] = []
+    for discrete_values in obj.get_discrete_vertices(1):
+        x,y,z = utils.get_x_y_z_mean(discrete_values)
+        data["X moy (en mm)"].append(round(x, ndigits))
+        data["Y moy (en mm)"].append(round(y, ndigits))
+        data["Z moy (en mm)"].append(round(z, ndigits))
+        data["Rayon moyen (en mm)"].append(round(utils.get_mean_radius(discrete_values), ndigits))
+        data["Rayon ecart type (en mm)"].append(round(utils.get_radius_std(discrete_values), ndigits))
+    return data
+
 
 def main():
-    pass
+    obj = parsers.parse_obj_file("datasets/Barette/3 - BARETTE v1.obj",normalised=True)
+    data = get_raw_data(obj, 6)
+    output.save_output_file('analyse_brute.txt', output.format_data(data, '\t', ["X (en mm)", "Y (en mm)", "Z (en mm)", "teta (en rad)", "rayon (en mm)","Xi-Xmoy","Yi-Ymoy"] ))
+    data_test.check_raw_data("datasets/Barette/BARETTE_Delta 1,0_analyse brute.txt", "analyse_brute.txt",eps=0.001)
+
+    data = get_discrete_data(obj, 6)
+    output.save_output_file('analyse_rayon.txt', output.format_data(data, '\t', ["X moy (en mm)", "Y moy (en mm)", "Z moy (en mm)","Rayon moyen (en mm)","Rayon ecart type (en mm)"] ))
+    data_test.check_discrete_data("datasets/Barette/BARETTE_Delta 1,0_analyse rayon.txt", "analyse_rayon.txt",eps=0.001)
+
 
 if __name__ == '__main__':
     main()
\ No newline at end of file

utils/files/file_data.py

@@ -61,6 +61,8 @@ class Object:
                 splitted_data.append([])
                 current_interval += step
             splitted_data[-1].append(line)
+        if splitted_data[0] == []:
+            splitted_data = splitted_data[1:]
         return splitted_data
 
     def get_faces(self)->list:

utils/files/output.py

@@ -2,6 +2,27 @@
 This module is used to manage the output files of the program.
 """
 
+def format_data(data:dict, separator:str, selected_columns:list = None) -> str:
+    """
+    Format the data to be saved in the output file.
+
+    :param data: Data to be formatted
+    :param selected_columns: Columns to be saved
+    :param separator: Separator of the columns
+    :return: Formatted data
+    """
+    output = ''
+    if selected_columns is None:
+        selected_columns = list(data.keys())
+    for column_name in selected_columns:
+        output += column_name + separator
+    output += '\n'
+    for i in range(len(data[selected_columns[0]])):
+        for column in selected_columns:
+            output += str(data[column][i]).ljust(len(column)) + separator
+        output += '\n'
+    return output
+
 def save_output_file(output_file:str, content:str):
     """
     Save the output file.

utils/files/parsers.py

@@ -3,7 +3,7 @@ This module contains functions to parse files.
 """
 from utils.files.file_data import Object
 
-def parse_obj_files(file_path:str,ratio:float = 1,normalised:bool = False)->Object:
+def parse_obj_file(file_path:str,ratio:float = 1,normalised:bool = False)->Object:
     """
     Parse an OBJ file and return a dict with the vertices and faces
     
@@ -41,7 +41,7 @@ def parse_obj_files(file_path:str,ratio:float = 1,normalised:bool = False)->Obje
 
         return Object(list(zip(x,y,z)), triangles)
  
-def parse_xyz_files(file_path: str, delimiter: str = ' ') -> dict:
+def parse_xyz_file(file_path: str, delimiter: str = ' ') -> dict:
     """
     Parses an xyz file and returns a dict containing the coordinates.
 

utils/math/utils.py

@@ -9,8 +9,16 @@ def get_mean(values:list):
     """
     return np.mean(values)
 
+def get_standard_deviation(values:list):
+    """
+    Get the standard deviation of the values.
+
+    :param values: values
+    :return: standard deviation of the values
+    """
+    return np.std(values)
 
-def get_x_y_mean(discrete_values:list):
+def get_x_y_z_mean(discrete_values:list):
     """
     Get the mean of the x and y coordinates in the discrete range.
 
@@ -35,6 +43,44 @@ def get_radius_from_x_y(xi:float, yi:float, x_mean:float, y_mean:float):
     """
     return np.sqrt((xi - x_mean) ** 2 + (yi - y_mean) ** 2)
 
+def get_mean_radius(discrete_values:list):
+    """
+    Get the mean of the radius in the discrete range.
+
+    :param discrete_values: discrete values
+    :return: mean of the radius in the discrete range
+    """
+    x_mean, y_mean, z_mean = get_x_y_z_mean(discrete_values)
+    radius = []
+    for x,y,z in discrete_values:
+        radius.append(get_radius_from_x_y(x,y,x_mean,y_mean))
+    return get_mean(radius)
+
+def get_radius_std(discrete_values:list):
+    """
+    Get the standard deviation of the radius in the discrete range.
+
+    :param discrete_values: discrete values
+    :return: standard deviation of the radius in the discrete range
+    """
+    x_mean, y_mean, z_mean = get_x_y_z_mean(discrete_values)
+    radius = []
+    for x,y,z in discrete_values:
+        radius.append(get_radius_from_x_y(x,y,x_mean,y_mean))
+    return get_standard_deviation(radius)
+
+def get_mean_teta(discrete_values:list):
+    """
+    Get the mean of the teta in the discrete range.
+
+    :param discrete_values: discrete values
+    :return: mean of the teta in the discrete range
+    """
+    x_mean, y_mean, z_mean = get_x_y_z_mean(discrete_values)
+    teta = []
+    for x,y,z in discrete_values:
+        teta.append(get_teta_from_x_y(x,y,x_mean,y_mean))
+    return get_mean(teta)
 
 def get_teta_from_x_y(xi:float, yi:float, x_mean:float, y_mean:float):
     """
@@ -46,4 +92,4 @@ def get_teta_from_x_y(xi:float, yi:float, x_mean:float, y_mean:float):
     :param y_mean: mean of y coordinates in the discrete range
     :return: teta for this point
     """
-    return np.arctan2((xi - x_mean)/(yi - y_mean))
\ No newline at end of file
+    return np.arctan2((xi - x_mean),(yi - y_mean))
\ No newline at end of file